medkit.text.ner.umls_norm_attribute#

Classes:

UMLSNormAttribute(cui, umls_version[, term, ...])

Normalization attribute linking an entity to a CUI in the UMLS knowledge base
class UMLSNormAttribute(cui, umls_version, term=None, score=None, sem_types=None, metadata=None, uid=None)[source]#

Normalization attribute linking an entity to a CUI in the UMLS knowledge base

Variables

  • uid – Identifier of the attribute

  • label – The attribute label, always set to EntityNormAttribute.LABEL

  • value – Value of the attribute, built by prefixing the cui with “umls:”

  • kb_name – Name of the knowledge base. Always “umls”

  • kb_id – CUI (Concept Unique Identifier) to which the annotation should be linked

  • cui – Convenience alias of kb_id

  • kb_version – Version of the UMLS database (ex: “202AB”)

  • umls_version – Convenience alias of kb_version

  • term – Optional normalized version of the entity text

  • score – Optional score reflecting confidence of this link

  • sem_types (Optional[List[str]]) – Optional IDs of semantic types of the CUI (ex: [“T047”])

  • metadata – Metadata of the attribute