Index

A

add() (AnnotationContainer method), [1] (AttributeContainer method), [1] add_class_name_to_data_dict() (in module medkit.core.dict_conv) add_install() (QuickUMLSMatcher class method) add_prov() (ProvTracer method), [1] add_prov_from_sub_tracer() (ProvTracer method), [1] ADICAPNormAttribute (class in medkit.text.ner) (class in medkit.text.ner.adicap_norm_attribute) align_and_map_tokens_with_tags() (in module medkit.text.ner.hf_tokenization_utils) ALL_CHAR_RULES (in module medkit.text.preprocessing.char_rules) all_docs (Collection property), [1] Annotation (class in medkit.core.annotation) AnnotationContainer (class in medkit.core) (class in medkit.core.annotation_container)

AnnotationType (in module medkit.core.annotation) Attribute (class in medkit.core) (class in medkit.core.attribute) AttributeContainer (class in medkit.core) (class in medkit.core.attribute_container) AttributeDuplicator (class in medkit.text.postprocessing) (class in medkit.text.postprocessing.attribute_duplicator) AudioAnnotationContainer (class in medkit.core.audio) (class in medkit.core.audio.annotation_container) AudioBuffer (class in medkit.core.audio) (class in medkit.core.audio.audio_buffer) AudioDocument (class in medkit.core.audio) (class in medkit.core.audio.document) augment_full_text_for_next_segment() (DocTranscriber method), [1]

B

batch_iter() (in module medkit.core.utils) batch_list() (in module medkit.core.utils) BatchData (class in medkit.training) (class in medkit.training.utils) BratInputConverter (class in medkit.io) (class in medkit.io.brat) BratOutputConverter (class in medkit.io) (class in medkit.io.brat)

build_context_attribute() (in module medkit.text.spacy.edsnlp) build_date_attribute() (in module medkit.text.spacy.edsnlp) build_history_attribute() (in module medkit.text.spacy.edsnlp) build_score_attribute() (in module medkit.text.spacy.edsnlp) build_spacy_doc_from_medkit_doc() (in module medkit.text.spacy.spacy_utils) build_spacy_doc_from_medkit_segment() (in module medkit.text.spacy.spacy_utils) build_value_attribute() (in module medkit.text.spacy.edsnlp)

C

CharReplacer (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.char_replacer) check_model_for_task_HF() (in module medkit.tools.hf_utils) check_rules_sanity() (FamilyDetector static method), [1] (HypothesisDetector static method), [1] (NegationDetector static method), [1] (RegexpMatcher static method), [1] clean_multiple_whitespaces_in_sentence() (in module medkit.core.text.utils) clean_newline_character() (in module medkit.core.text.utils) clean_parentheses_eds() (in module medkit.core.text.utils) clean_up_gaps_in_normalized_spans() (in module medkit.core.text.span_utils) clear_installs() (QuickUMLSMatcher class method) collate() (TrainableComponent method), [1] Collection (class in medkit.core) (class in medkit.core.collection)

compute() (MetricsComputer method), [1] (SeqEvalEvaluator method) (SeqEvalMetricsComputer method) compute_nested_segments() (in module medkit.text.postprocessing) (in module medkit.text.postprocessing.alignment_utils) concatenate() (in module medkit.core.text.span_utils) configure_optimizer() (TrainableComponent method), [1] ContextOperation (class in medkit.core.text) (class in medkit.core.text.operation) convert() (SpacyOutputConverter method) convert_labels_to_tags() (in module medkit.text.ner.hf_tokenization_utils) copy() (Attribute method), [1] create_text_operation() (in module medkit.core.text) (in module medkit.core.text.operation) CustomTextOpType (class in medkit.core.text) (class in medkit.core.text.operation)

D

DateAttribute (class in medkit.text.ner) (class in medkit.text.ner.date_attribute) DEFAULT_ATTRIBUTE_FACTORIES (in module medkit.text.spacy.edsnlp) DEFAULT_LABEL_MAPPING (QuickUMLSMatcher attribute) DefaultPrinterCallback (class in medkit.training) (class in medkit.training.callbacks) del_store() (GlobalStore class method), [1] description (Operation property), [1] (RTTMInputConverter property), [1] DictConvertible (class in medkit.core.dict_conv) DocOperation (class in medkit.core) (class in medkit.core.operation) DocPipeline (class in medkit.core) (class in medkit.core.doc_pipeline) DocTranscriber (class in medkit.audio.transcription) (class in medkit.audio.transcription.doc_transcriber)

Document (class in medkit.core) (class in medkit.core.document) DOT_RULES (in module medkit.text.preprocessing.char_rules) Downmixer (class in medkit.audio.preprocessing) (class in medkit.audio.preprocessing.downmixer) DucklingMatcher (class in medkit.text.ner) (class in medkit.text.ner.duckling_matcher) DuplicateFinder (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.duplicate_finder) DuplicationAttribute (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.duplicate_finder) duration (AudioBuffer property), [1] DurationAttribute (class in medkit.text.ner) (class in medkit.text.ner.date_attribute)

E

EDSCleaner (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.eds_cleaner) EDSNLPDocPipeline (class in medkit.text.spacy.edsnlp) EDSNLPPipeline (class in medkit.text.spacy.edsnlp) end (Span property), [1] entities (TextAnnotationContainer property), [1] Entity (class in medkit.core.text) (class in medkit.core.text.annotation)

EntityAttributeContainer (class in medkit.core.text) (class in medkit.core.text.entity_attribute_container) EntityNormAttribute (class in medkit.core.text) (class in medkit.core.text.entity_norm_attribute) evaluation_epoch() (Trainer method), [1] extract() (in module medkit.core.text.span_utils) extract_anns_and_attrs_from_spacy_doc() (in module medkit.text.spacy.spacy_utils)

F

FamilyDetector (class in medkit.text.context) (class in medkit.text.context.family_detector) FamilyDetectorRule (class in medkit.text.context) (class in medkit.text.context.family_detector) FamilyMetadata (class in medkit.text.context) (class in medkit.text.context.family_detector) FileAudioBuffer (class in medkit.core.audio) (class in medkit.core.audio.audio_buffer) format() (DateAttribute method), [1] (DurationAttribute method), [1] (RelativeDateAttribute method), [1]

forward() (TrainableComponent method), [1] FRACTION_RULES (in module medkit.text.preprocessing.char_rules) from_dict() (Attribute class method), [1] (DictConvertible class method) (ModifiedSpan class method), [1] (Relation class method), [1] (Segment class method), [1] (Span class method), [1] (TextDocument class method), [1] (TranscribedDocument class method), [1]

G

get() (AnnotationContainer method), [1] (AttributeContainer method), [1] get_by_id() (AnnotationContainer method), [1] get_class_name_from_data_dict() (in module medkit.core.dict_conv) get_containing_audio_spans() (TranscribedDocument method), [1] get_dataloader() (Trainer method), [1] get_entities() (TextAnnotationContainer method), [1] get_example() (HypothesisDetector class method), [1] get_ids() (AnnotationContainer method), [1] get_norms() (EntityAttributeContainer method), [1] get_prov() (ProvTracer method), [1]

get_provs() (ProvTracer method), [1] get_relations() (TextAnnotationContainer method), [1] get_segments() (TextAnnotationContainer method), [1] get_snippet() (TextDocument method), [1] get_store() (GlobalStore class method), [1] get_sub_prov_tracer() (ProvTracer method), [1] get_sub_prov_tracers() (ProvTracer method), [1] get_subclass_for_data_dict() (SubclassMapping class method) GlobalStore (class in medkit.core) (class in medkit.core.store) guess_umls_version() (in module medkit.text.ner.umls_utils)

H

has_prov() (ProvTracer method), [1] has_sub_prov_tracer() (ProvTracer method), [1] HFEntityMatcher (class in medkit.text.ner.hf_entity_matcher) HFEntityMatcherTrainable (class in medkit.text.ner.hf_entity_matcher_trainable) HFTranscriberFunction (class in medkit.audio.transcription.hf_transcriber_function) HFTranslator (class in medkit.text.translation.hf_translator) HypothesisDetector (class in medkit.text.context) (class in medkit.text.context.hypothesis_detector)

HypothesisDetectorRule (class in medkit.text.context) (class in medkit.text.context.hypothesis_detector) HypothesisRuleMetadata (class in medkit.text.context) (class in medkit.text.context.hypothesis_detector) HypothesisVerbMetadata (class in medkit.text.context) (class in medkit.text.context.hypothesis_detector)

I

IAMSystemMatcher (class in medkit.text.ner) (class in medkit.text.ner.iamsystem_matcher) init_store() (GlobalStore class method), [1]

InputConverter (class in medkit.core) (class in medkit.core.conversion) insert() (in module medkit.core.text.span_utils)

L

LABEL (DuplicationAttribute attribute), [1] (EntityNormAttribute attribute), [1] (TNMAttribute attribute) length (Span property), [1] LIGATURE_RULES (in module medkit.text.preprocessing.char_rules) load() (BratInputConverter method), [1] (RTTMInputConverter method), [1] (SpacyInputConverter method) (TrainableComponent method), [1] load_annotations() (BratInputConverter method), [1] load_audio_anns() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) load_audio_document() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) load_audio_documents() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) load_doc() (BratInputConverter method), [1] (RTTMInputConverter method), [1]

load_rules() (FamilyDetector static method), [1] (HypothesisDetector static method), [1] (NegationDetector static method), [1] (RegexpMatcher static method), [1] load_section_definition() (SectionTokenizer static method), [1] load_syntagma_definition() (SyntagmaTokenizer static method), [1] load_text_anns() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) load_text_document() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) load_text_documents() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) load_turns() (RTTMInputConverter method), [1] load_umls() (in module medkit.text.ner.umls_utils) load_verbs() (HypothesisDetector static method), [1] lstrip() (in module medkit.text.segmentation.tokenizer_utils)

M

make_forward_pass() (Trainer method), [1] make_trainable() (HFEntityMatcher static method) medkit.audio module medkit.audio.preprocessing module medkit.audio.preprocessing.downmixer module medkit.audio.preprocessing.power_normalizer module medkit.audio.preprocessing.resampler module medkit.audio.segmentation module medkit.audio.segmentation.pa_speaker_detector module medkit.audio.segmentation.webrtc_voice_detector module medkit.audio.transcription module medkit.audio.transcription.doc_transcriber module medkit.audio.transcription.hf_transcriber_function module medkit.audio.transcription.sb_transcriber_function module medkit.audio.transcription.transcribed_document module medkit.core module medkit.core.annotation module medkit.core.annotation_container module medkit.core.attribute module medkit.core.attribute_container module medkit.core.audio module medkit.core.audio.annotation module medkit.core.audio.annotation_container module medkit.core.audio.audio_buffer module medkit.core.audio.document module medkit.core.audio.operation module medkit.core.audio.span module medkit.core.collection module medkit.core.conversion module medkit.core.data_item module medkit.core.dict_conv module medkit.core.doc_pipeline module medkit.core.document module medkit.core.id module medkit.core.operation module medkit.core.operation_desc module medkit.core.pipeline module medkit.core.prov_store module medkit.core.prov_tracer module medkit.core.store module medkit.core.text module medkit.core.text.annotation module medkit.core.text.annotation_container module medkit.core.text.document module medkit.core.text.entity_attribute_container module medkit.core.text.entity_norm_attribute module medkit.core.text.operation module medkit.core.text.span module medkit.core.text.span_utils module medkit.core.text.utils module medkit.core.utils module medkit.io module medkit.io.brat module medkit.io.medkit_json module medkit.io.medkit_json.audio module medkit.io.medkit_json.text module medkit.io.rttm module medkit.io.spacy module medkit.text module medkit.text.context module medkit.text.context.family_detector module medkit.text.context.hypothesis_detector module medkit.text.context.negation_detector module medkit.text.metrics module medkit.text.metrics.ner module medkit.text.ner module medkit.text.ner.adicap_norm_attribute module medkit.text.ner.date_attribute module medkit.text.ner.duckling_matcher module medkit.text.ner.hf_entity_matcher module medkit.text.ner.hf_entity_matcher_trainable module medkit.text.ner.hf_tokenization_utils module medkit.text.ner.iamsystem_matcher module medkit.text.ner.quick_umls_matcher module medkit.text.ner.regexp_matcher module medkit.text.ner.tnm_attribute module medkit.text.ner.umls_coder_normalizer module medkit.text.ner.umls_norm_attribute module medkit.text.ner.umls_utils module medkit.text.postprocessing module medkit.text.postprocessing.alignment_utils module medkit.text.postprocessing.attribute_duplicator module medkit.text.preprocessing module medkit.text.preprocessing.char_replacer module medkit.text.preprocessing.char_rules module medkit.text.preprocessing.duplicate_finder module medkit.text.preprocessing.eds_cleaner module

medkit.text.preprocessing.normalizer module medkit.text.relations module medkit.text.relations.syntactic_relation_extractor module medkit.text.segmentation module medkit.text.segmentation.rush_sentence_tokenizer module medkit.text.segmentation.section_tokenizer module medkit.text.segmentation.sentence_tokenizer module medkit.text.segmentation.syntagma_tokenizer module medkit.text.segmentation.tokenizer_utils module medkit.text.spacy module medkit.text.spacy.displacy_utils module medkit.text.spacy.doc_pipeline module medkit.text.spacy.edsnlp module medkit.text.spacy.pipeline module medkit.text.spacy.spacy_utils module medkit.text.translation module medkit.text.translation.hf_translator module medkit.tools module medkit.tools.hf_utils module medkit.training module medkit.training.callbacks module medkit.training.trainable_component module medkit.training.trainer module medkit.training.trainer_config module medkit.training.utils module medkit_doc_to_displacy() (in module medkit.text.spacy.displacy_utils) MedkitKeyword (class in medkit.text.ner) (class in medkit.text.ner.iamsystem_matcher) MemoryAudioBuffer (class in medkit.core.audio) (class in medkit.core.audio.audio_buffer) MetricsComputer (class in medkit.training) (class in medkit.training.utils) ModifiedSpan (class in medkit.core.text) (class in medkit.core.text.span) module medkit.audio medkit.audio.preprocessing medkit.audio.preprocessing.downmixer medkit.audio.preprocessing.power_normalizer medkit.audio.preprocessing.resampler medkit.audio.segmentation medkit.audio.segmentation.pa_speaker_detector medkit.audio.segmentation.webrtc_voice_detector medkit.audio.transcription medkit.audio.transcription.doc_transcriber medkit.audio.transcription.hf_transcriber_function medkit.audio.transcription.sb_transcriber_function medkit.audio.transcription.transcribed_document medkit.core medkit.core.annotation medkit.core.annotation_container medkit.core.attribute medkit.core.attribute_container medkit.core.audio medkit.core.audio.annotation medkit.core.audio.annotation_container medkit.core.audio.audio_buffer medkit.core.audio.document medkit.core.audio.operation medkit.core.audio.span medkit.core.collection medkit.core.conversion medkit.core.data_item medkit.core.dict_conv medkit.core.doc_pipeline medkit.core.document medkit.core.id medkit.core.operation medkit.core.operation_desc medkit.core.pipeline medkit.core.prov_store medkit.core.prov_tracer medkit.core.store medkit.core.text medkit.core.text.annotation medkit.core.text.annotation_container medkit.core.text.document medkit.core.text.entity_attribute_container medkit.core.text.entity_norm_attribute medkit.core.text.operation medkit.core.text.span medkit.core.text.span_utils medkit.core.text.utils medkit.core.utils medkit.io medkit.io.brat medkit.io.medkit_json medkit.io.medkit_json.audio medkit.io.medkit_json.text medkit.io.rttm medkit.io.spacy medkit.text medkit.text.context medkit.text.context.family_detector medkit.text.context.hypothesis_detector medkit.text.context.negation_detector medkit.text.metrics medkit.text.metrics.ner medkit.text.ner medkit.text.ner.adicap_norm_attribute medkit.text.ner.date_attribute medkit.text.ner.duckling_matcher medkit.text.ner.hf_entity_matcher medkit.text.ner.hf_entity_matcher_trainable medkit.text.ner.hf_tokenization_utils medkit.text.ner.iamsystem_matcher medkit.text.ner.quick_umls_matcher medkit.text.ner.regexp_matcher medkit.text.ner.tnm_attribute medkit.text.ner.umls_coder_normalizer medkit.text.ner.umls_norm_attribute medkit.text.ner.umls_utils medkit.text.postprocessing medkit.text.postprocessing.alignment_utils medkit.text.postprocessing.attribute_duplicator medkit.text.preprocessing medkit.text.preprocessing.char_replacer medkit.text.preprocessing.char_rules medkit.text.preprocessing.duplicate_finder medkit.text.preprocessing.eds_cleaner medkit.text.preprocessing.normalizer medkit.text.relations medkit.text.relations.syntactic_relation_extractor medkit.text.segmentation medkit.text.segmentation.rush_sentence_tokenizer medkit.text.segmentation.section_tokenizer medkit.text.segmentation.sentence_tokenizer medkit.text.segmentation.syntagma_tokenizer medkit.text.segmentation.tokenizer_utils medkit.text.spacy medkit.text.spacy.displacy_utils medkit.text.spacy.doc_pipeline medkit.text.spacy.edsnlp medkit.text.spacy.pipeline medkit.text.spacy.spacy_utils medkit.text.translation medkit.text.translation.hf_translator medkit.tools medkit.tools.hf_utils medkit.training medkit.training.callbacks medkit.training.trainable_component medkit.training.trainer medkit.training.trainer_config medkit.training.utils move() (in module medkit.core.text.span_utils)

N

NegationDetector (class in medkit.text.context) (class in medkit.text.context.negation_detector) NegationDetectorRule (class in medkit.text.context) (class in medkit.text.context.negation_detector) NegationMetadata (class in medkit.text.context) (class in medkit.text.context.negation_detector) NEROperation (class in medkit.core.text) (class in medkit.core.text.operation)

new_text (NormalizerRule property), [1] normalize_spans() (in module medkit.core.text.span_utils) Normalizer (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.normalizer) NormalizerRule (class in medkit.text.preprocessing) (class in medkit.text.preprocessing.normalizer) norms (EntityAttributeContainer property), [1]

O

on_epoch_begin() (TrainerCallback method), [1] on_epoch_end() (TrainerCallback method), [1] on_save() (TrainerCallback method), [1] on_step_begin() (TrainerCallback method), [1] on_step_end() (TrainerCallback method), [1] on_train_begin() (TrainerCallback method), [1] on_train_end() (TrainerCallback method), [1]

Operation (class in medkit.core) (class in medkit.core.operation) OperationDescription (class in medkit.core) (class in medkit.core.operation_desc) OutputConverter (class in medkit.core) (class in medkit.core.conversion) overlaps() (Span method), [1]

P

PASpeakerDetector (class in medkit.audio.segmentation.pa_speaker_detector) pattern_to_replace (NormalizerRule property), [1] Pipeline (class in medkit.core) (class in medkit.core.pipeline) PipelineStep (class in medkit.core) (class in medkit.core.pipeline) PlaceholderAudioBuffer (class in medkit.core.audio.audio_buffer) PowerNormalizer (class in medkit.audio.preprocessing) (class in medkit.audio.preprocessing.power_normalizer)

prepare_batch() (MetricsComputer method), [1] (SeqEvalMetricsComputer method) preprocess() (TrainableComponent method), [1] preprocess_term_to_match() (in module medkit.text.ner.umls_utils) PreprocessingOperation (class in medkit.core.audio) (class in medkit.core.audio.operation) Prov (class in medkit.core) (class in medkit.core.prov_tracer) ProvTracer (class in medkit.core) (class in medkit.core.prov_tracer)

Q

QuickUMLSMatcher (class in medkit.text.ner.quick_umls_matcher)

QUOTATION_RULES (in module medkit.text.preprocessing.char_rules)

R

RAW_LABEL (AudioDocument attribute), [1] read() (AudioBuffer method), [1] RegexpMatcher (class in medkit.text.ner) (class in medkit.text.ner.regexp_matcher) RegexpMatcherNormalization (class in medkit.text.ner) (class in medkit.text.ner.regexp_matcher) RegexpMatcherRule (class in medkit.text.ner) (class in medkit.text.ner.regexp_matcher) RegexpMetadata (class in medkit.text.ner) (class in medkit.text.ner.regexp_matcher) Relation (class in medkit.core.text) (class in medkit.core.text.annotation) relations (TextAnnotationContainer property), [1] RelativeDateAttribute (class in medkit.text.ner) (class in medkit.text.ner.date_attribute) RelativeDateDirection (class in medkit.text.ner) (class in medkit.text.ner.date_attribute) remove() (in module medkit.core.text.span_utils) replace() (in module medkit.core.text.span_utils) replace_multiple_newline_after_sentence() (in module medkit.core.text.utils) replace_newline_inside_sentence() (in module medkit.core.text.utils) replace_point_after_keywords() (in module medkit.core.text.utils) replace_point_before_keywords() (in module medkit.core.text.utils) replace_point_in_numbers() (in module medkit.core.text.utils) replace_point_in_uppercase() (in module medkit.core.text.utils) Resampler (class in medkit.audio.preprocessing.resampler) rstrip() (in module medkit.text.segmentation.tokenizer_utils) RTTMInputConverter (class in medkit.io) (class in medkit.io.rttm) RTTMOutputConverter (class in medkit.io) (class in medkit.io.rttm)

run() (AttributeDuplicator method), [1] (CharReplacer method), [1] (DocPipeline method), [1] (DocTranscriber method), [1] (Downmixer method), [1] (DucklingMatcher method), [1] (DuplicateFinder method), [1] (EDSCleaner method), [1] (FamilyDetector method), [1] (HFEntityMatcher method) (HFTranslator method) (HypothesisDetector method), [1] (NegationDetector method), [1] (Normalizer method), [1] (PASpeakerDetector method) (Pipeline method), [1] (PowerNormalizer method), [1] (QuickUMLSMatcher method) (RegexpMatcher method), [1] (Resampler method) (RushSentenceTokenizer method) (SectionTokenizer method), [1] (SentenceTokenizer method), [1] (SpacyDocPipeline method), [1] (SpacyPipeline method), [1] (SyntacticRelationExtractor method) (SyntagmaTokenizer method), [1] (UMLSCoderNormalizer method) (WebRTCVoiceDetector method) RushSentenceTokenizer (class in medkit.text.segmentation.rush_sentence_tokenizer)

S

save() (BratOutputConverter method), [1] (RTTMOutputConverter method), [1] (TrainableComponent method), [1] (Trainer method), [1] save_audio_anns() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) save_audio_document() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) save_audio_documents() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.audio) save_checkpoint() (Trainer method), [1] save_doc() (RTTMOutputConverter method), [1] save_prov_to_dot() (in module medkit.tools) save_rules() (FamilyDetector static method), [1] (HypothesisDetector static method), [1] (NegationDetector static method), [1] (RegexpMatcher static method), [1] save_section_definition() (SectionTokenizer static method), [1] save_syntagma_definition() (SyntagmaTokenizer static method), [1] save_text_anns() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) save_text_document() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) save_text_documents() (in module medkit.io.medkit_json) (in module medkit.io.medkit_json.text) save_turn_segments() (RTTMOutputConverter method), [1] SBTranscriberFunction (class in medkit.audio.transcription.sb_transcriber_function) SectionModificationRule (class in medkit.text.segmentation) (class in medkit.text.segmentation.section_tokenizer) SectionTokenizer (class in medkit.text.segmentation) (class in medkit.text.segmentation.section_tokenizer) Segment (class in medkit.core.audio) (class in medkit.core.audio.annotation) (class in medkit.core.text) (class in medkit.core.text.annotation)

SegmentationOperation (class in medkit.core.audio) (class in medkit.core.audio.operation) (class in medkit.core.text) (class in medkit.core.text.operation) segments (TextAnnotationContainer property), [1] segments_to_displacy() (in module medkit.text.spacy.displacy_utils) SentenceTokenizer (class in medkit.text.segmentation) (class in medkit.text.segmentation.sentence_tokenizer) SeqEvalEvaluator (class in medkit.text.metrics.ner) SeqEvalMetricsComputer (class in medkit.text.metrics.ner) set_prov_tracer() (Operation method), [1] (RTTMInputConverter method), [1] SIGN_RULES (in module medkit.text.preprocessing.char_rules) SPACE_RULES (in module medkit.text.preprocessing.char_rules) SpacyDocPipeline (class in medkit.text.spacy) (class in medkit.text.spacy.doc_pipeline) SpacyInputConverter (class in medkit.io.spacy) SpacyOutputConverter (class in medkit.io.spacy) SpacyPipeline (class in medkit.text.spacy) (class in medkit.text.spacy.pipeline) Span (class in medkit.core.audio) (class in medkit.core.audio.span) (class in medkit.core.text) (class in medkit.core.text.span) start (Span property), [1] Store (class in medkit.core) (class in medkit.core.store) strip() (in module medkit.text.segmentation.tokenizer_utils) SubclassMapping (class in medkit.core.dict_conv) SyntacticRelationExtractor (class in medkit.text.relations.syntactic_relation_extractor) SyntagmaTokenizer (class in medkit.text.segmentation) (class in medkit.text.segmentation.syntagma_tokenizer)

T

TextAnnotation (class in medkit.core.text) (class in medkit.core.text.annotation) TextAnnotationContainer (class in medkit.core.text) (class in medkit.core.text.annotation_container) TextDocument (class in medkit.core.text) (class in medkit.core.text.document) TNMAttribute (class in medkit.text.ner.tnm_attribute) to_brat() (Attribute method), [1] to_device() (BatchData method), [1] to_dict() (DictConvertible method) to_spacy() (Attribute method), [1] train() (Trainer method), [1] TrainableComponent (class in medkit.training) (class in medkit.training.trainable_component) Trainer (class in medkit.training) (class in medkit.training.trainer)

TrainerCallback (class in medkit.training) (class in medkit.training.callbacks) TrainerConfig (class in medkit.training) (class in medkit.training.trainer_config) training_epoch() (Trainer method), [1] transcribe() (TranscriberFunction method), [1] TranscribedDocument (class in medkit.audio.transcription) (class in medkit.audio.transcription.transcribed_document) TranscriberFunction (class in medkit.audio.transcription) (class in medkit.audio.transcription.doc_transcriber) TranscriberFunctionDescription (class in medkit.audio.transcription) (class in medkit.audio.transcription.doc_transcriber) transform_entities_to_tags() (in module medkit.text.ner.hf_tokenization_utils) trim() (AudioBuffer method), [1] trim_duration() (AudioBuffer method), [1]

U

UMLSCoderNormalizer (class in medkit.text.ner.umls_coder_normalizer) UMLSEntry (class in medkit.text.ner.umls_utils)

UMLSNormAttribute (class in medkit.text.ner) (class in medkit.text.ner.umls_norm_attribute) update_learning_rate() (Trainer method), [1]

W

WebRTCVoiceDetector (class in medkit.audio.segmentation.webrtc_voice_detector)